Bioinformatics tutorials#

Bioinformatics tutorials provided by Tufts Research Technology.

Bioinformatics tools guide

An overview of the bioinformatics tools currently available Tufts cluster, organized by specific research areas.

Parallel read alignment with slurm

An overview of running read alignment in parallel using the SLURM job scheduler

Running nfcore pipelines at Tufts HPC

How to run nf-core pipelines on Tufts HPC

Using singularity in bioinformatics

Introduction to biocontainers and singularity

Using Python Packages with Jupyter Notebook

Exploring Python Bioiformatics Packages with Jupyter Notebook

scRNA-seq in Python

Set Up Conda Environment and Create Jupyter Kernel for scRNA-seq Analysis

scRNA-seq in R

scRNA-seq analysis with RStudio

Parallel Computing in R for Bioinformatics

Package installation using container-mod

Creating modulefile for containers

Differential Expression Analysis with DESeq2 using OOD Rstudio