## iGenomes
To make the use of reference genomes easier, Illumina has developed a centralized resource called iGenomes. The most commonly used reference genome files are organized in a consistent structure for multiple genomes. 

We have downloaded a copy of iGenomes onto our cluster in `/cluster/tufts/biocontainers/datasets/igenomes`. 

Below is the list of model organisms in iGenomes:

- Arabidopsis thaliana
- Bacillus cereus ATCC 10987
- Bacillus subtilis 168
- Bos taurus
- Caenorhabditis elegans
- Canis familiaris
- Danio rerio
- Drosophila melanogaster
- Enterobacteriophage lambda
- Equus caballus
- Escherichia coli K 12 DH10B
- Escherichia coli K 12 MG1655
- Gallus gallus
- Glycine max
- Homo sapiens
- Macaca mulatta
- Mus musculus
- Mycobacterium tuberculosis H37RV
- Oryza sativa japonica
- Pan troglodytes
- PhiX
- Pseudomonas aeruginosa PAO1
- Rattus norvegicus
- Rhodobacter sphaeroides 2.4.1
- Saccharomyces cerevisiae
- Schizosaccharomyces pombe
- Sorangium cellulosum So ce 56
- Sorghum bicolor
- Staphylococcus aureus NCTC 8325
- Sus scrofa
- Zea mays